Showing posts with label light. Show all posts
Showing posts with label light. Show all posts

Thursday, May 16, 2024

PARTY OF TWO: ANGLERFISH

The festive lassie you see here is an Anglerfish. They always look to be celebrating a birthday of some kind, albeit solo. This party is happening deep in our oceans and for those that join in, I hope they like it rough.

The wee candle you see on her forehead is a photophore, a tiny bit of luminous dorsal spine. Many of our sea dwellers have these candle-like bits illuminating the depths. You may have noticed them glowing around the eyes of many of our cephalopod friends. 

These light organs can be a simple grouping of photogenic cells or more complex with light reflectors, lenses, colour filters able to adjust the intensity or angular distribution of the light they produce. Some species have adapted their photophores to avoid being eaten, in others, it's an invitation to lunch.

In anglerfish' world, this swaying light is dead sexy. It's an adaptation used to attract prey and mates alike.

Deep in the murky depths of the Atlantic and Antarctic oceans, hopeful female anglerfish light up their sexy lures. When a male latches onto this tasty bit of flesh, he fuses himself totally. He might be one of several potential mates. She's not picky, just hungry. Lure. Feed. Mate. Repeat.

A friend asked if anglerfish mate for life. Well, yes.... yes, indeed they do.

Mating is a tough business down in the depths. Her body absorbs all the yummy nutrients of his body over time until all that's left are his testes. While unusual, it is only one of many weird and whacky ways our fishy friends communicate, entice, hunt and creatively survive and thrive. The deepest, darkest part of the ocean isn't empty — its hungry.

The evolution of fish began about 530 million years ago with the first fish lineages belonging to the Agnatha, a superclass of jawless fish. We still see them in our waters as cyclostomes but have lost the conodonts and ostracoderms to the annals of time. Like all vertebrates, fish have bilateral symmetry; when divided down the middle or central axis, each half is the same. Organisms with bilateral symmetry are generally more agile, making finding a mate, hunting or avoiding being hunted a whole lot easier.

When we envision fish, we generally picture large eyes, gills, a well-developed mouth. The earliest animals that we classify as fish appeared as soft-bodied chordates who lacked a true spine. While they were spineless, they did have notochords, a cartilaginous skeletal rod that gave them more dexterity than the cold-blooded invertebrates who shared those ancient seas and evolved without a backbone. 

Fish would continue to evolve throughout the Paleozoic, diversifying into a wide range of forms. Several forms of Paleozoic fish developed external armour that protected them from predators. The first fish with jaws appeared in the Silurian period, after which many species, including sharks, became formidable marine predators rather than just the prey of arthropods.

Fish in general respire using gills, are most often covered with bony scales and propel themselves using fins. There are two main types of fins, median fins and paired fins. The median fins include the caudal fin or tail fin, the dorsal fin, and the anal fin. Now there may be more than one dorsal, and one anal fin in some fishes.

The paired fins include the pectoral fins and the pelvic fins. And these paired fins are connected to, and supported by, pectoral and pelvic girdles, at the shoulder and hip; in the same way, our arms and legs are connected to and supported by, pectoral and pelvic girdles. This arrangement is something we inherited from the ancestors we share with fish. They are homologous structures.

When we speak of early vertebrates, we are often talking about fish. Fish is a term we use a lot in our everyday lives but taxonomically it is not all that useful. When we say, fish we generally mean an ectothermic, aquatic vertebrate with gills and fins.

Fortunately, many of our fishy friends have ended up in the fossil record. We may see some of the soft bits from time to time, as in the lovely fossil fish found in concretion in Brazil, but we often see fish skeletons. Vertebrates with hard skeletons had a much better chance of being preserved. 

Eohiodon Fish, McAbee Fossil Beds
In British Columbia, we have lovely two-dimensional Eocene fossil fish well-represented from the Allenby of Princeton and the McAbee Fossil Beds. 

We have the Tiktaalik roseae, a large freshwater fish, from 375 million-year-old Devonian deposits on Ellesmere Island in Canada's Arctic. Tiktaalik is a wonderfully bizarre creature with a flat, almost reptilian head but also fins, scales and gills. We have other wonders from this time. 

Canada also boasts spectacular antiarch placoderms, Bothriolepsis, found in the Upper Devonian shales of Miguasha in Quebec.

There are fragments of bone-like tissues from as early as the Late Cambrian with the oldest fossils that are truly recognizable as fishes come from the Middle Ordovician from North America, South America and Australia. At the time, South America and Australia were part of a supercontinent called Gondwana. North America was part of another supercontinent called Laurentia and the two were separated by deep oceans.

These two supercontinents and others that were also present were partially covered by shallow equatorial seas and the continents themselves were barren and rocky. Land plants didn't evolve until later in the Silurian Period. In these shallow equatorial seas, a large diverse and widespread group of armoured, jawless fishes evolved: the Pteraspidomorphi. The first of our three groups of ostracoderms. The Pteraspidomorphi are divided into three major groups: the Astraspida, Arandaspida and the Heterostraci.

The oldest and most primitive pteraspidomorphs were the Astraspida and the Arandaspida. You'll notice that all three of these taxon names contain 'aspid', which means shield. This is because these early fishes — and many of the Pteraspidomorphi — possessed large plates of dermal bone at the anterior end of their bodies. This dermal armour was very common in early vertebrates, but it was lost in their descendants. 

Arandaspida is represented by two well-known genera: Sacabampaspis, from South America and Arandaspis from Australia. Arandaspis have large, simple, dorsal and ventral head shields. Their bodies were fusiform, which means they were shaped sort of like a spindle, fat in the middle and tapering at both ends. Picture a sausage that is a bit wider near the centre with a crisp outer shell.

If you're a keen bean to see an anglerfish that recently washed up on the shores of Newport Beach this past May, hit this link: https://www.theguardian.com/us-news/2021/may/11/deep-sea-anglerfish-california-beach-finding-nemo. Kudos for my colleague, Giovanni, bringing this gloriously horrific lovely to my attention. 

Wednesday, April 3, 2024

BIOLUMINESCENCE: CHEMICAL POETRY

Light in the oceans? It is chemistry, my friends. 

In the inky blackness of the deep sea, more than 90% of the animals are luminescent. It is quite a startling number but makes good sense when you think of the edge bioluminescence provides. 

The ability to generate light helps umpteen animals find mates, attract prey and avoid predation. Handy stuff, light. 

What you know about light above the surface does not hold true for the light you see as bioluminescence. Its energy and luminosity come from a chemical reaction. 

In a luminescent reaction, two types of chemicals — luciferin and luciferase — combine together. Together, they produce cold light — light that generates less than 20% thermal radiation or heat. 

The light you see is produced by a compound called Luciferin. It is the shiny, showy bit in this chemical show. Luciferase acts as an enzyme, the substance that acts as a catalyst controlling the rate of chemical reactions, allowing the luciferin to release energy as it is oxidized. The colour of the light depends on the chemical structures of the chemicals. There are more than a dozen known chemical luminescent systems, meaning that bioluminescence evolved independently in different groups of organisms.

Coelenterazine is the type of luciferin we find in shrimp, fish and jellyfish. Dinoflagellates and krill share another class of unique luciferins, while ostracods or firefleas and some fish have a completely different luciferin. 

The luciferase found in dinoflagellates is related to the green chemical chlorophyll found in plants. Bioluminescent dinoflagellates are a type of plankton — teensy marine organisms that make the seaways shimmer like the Milky Way as you swim through them. 

Their twinkling lights are brief, each containing about 100 million photons that shine for a tenth of a second. While each individual flicker is here and gone in the wink of an eye, en masse they are awe-inspiring. I have spent many wondrous evenings scuba diving amongst these glittering denizens off our shores. 

Cotylorhiza Tuberculata Jellyfish
In this close up of a Cotylorhiza Tuberculata Jellyfish, you can see the luminosity of her blue and white tentacles. The occurrence of identical luciferins for different types of organisms may suggest a dietary source for some groups strengthening the adage, you are what you eat, or perhaps you glow how you eat

Bacteria and fireflies have unique luminescent chemistries. Fireflies light up when oxygen combines with calcium, adenosine triphosphate (ATP) and luciferin in the presence of luciferase. 

For bacteria, the world stage of luminosity is quite small — and a bit gormless. Just how much light they emit and when is a free-for-all. Not so for the rest of our bioluminescent friends who have very precise control over when they shine and just how bright. 

Bioluminescence comes in a variety of colours, from blue through red. The colour is based on the chemistry, which involves a substrate molecule called luciferin, the source of energy that goes into light, and an enzyme called luciferase or photoprotein. 

Most of this lighting up of our world happens on land or in saltwater. There are almost no bioluminescent organisms native to freshwater.

In terrestrial plants and animals — fireflies, beetles and fungi like this Ghost Fungus, Omphalotus nidiformis, a gilled basidiomycete mushroom — we commonly find green, yellow, and sometimes red. 

In the ocean, bioluminescence is mostly blue-green or green. You would think that blues and green would not show up all that well in our seas but, surprisingly, they do. While sound travels better through saltwater than air, it is the reverse for light. 

Various colours of light do not transmit equally through saltwater. Once we move deeper than the top layer of the ocean warmed by the sun and brimming with nutrients, the epipelagic zone, and move deeper through the mesopelagic, deeper and deeper still to the bathypelagic, frigid abyssalpelagic and finally the deep trenches of the icy pressure and all but inhospitable hadalpelagic, less and less light — until no light — gets through.

It is the twilight of the mesopelagic, 200 - 1000 metres below the surface, that is the sweet spot for most of our bioluminescent friends. Here, only very faint sunlight gets through. The water pressure is higher than at the surface but still lacks the crushing intensity of the lower zones. It is here that bioluminescence becomes a real advantage — good real estate and the showmanship of light pays gold.

We know that the deeper you go in our oceans, less and less sunlight gets through, so if the purpose of bioluminescence is to provide a signal that is noticed by prey, potential mates and predators alike, it is important that the light moves through the seawater, and not be absorbed or scattered — and this plays out in the colours evolved to be seen here. 

If you have spent any time underwater, you will know that blue-green light transmits best through seawater. The deeper you go, the colours fade. Gone are the reds and yellows until everything looks brown or blue-green. Because of this, it is no surprise that blue-green is the most common colouring of bioluminescence in our oceans. 

There are some exceptions to the blue-green/green colour rule — minuscule planktonic polychaete worms, Tomopteris helgolandica, emit yellow light, and deep-sea fish Malacosteus niger in the family Stomiidae, the barbeled dragonfishes, produce both red and blue. 

Malacosteus niger's unique adaptation of producing red bioluminescence is only found in two other deep-sea dwelling creatures, Aristostomias and Pachystomias

This rare form of bioluminescence can reach up to 700 nm in the deep-sea and cannot be perceived by green and blue bioluminescent organisms — granting M. niger a considerable advantage while hunting at depth.

The red light may function as an invisible searchlight of sorts because most animals in the ocean cannot see red light, while the eyes of M. niger are red-sensitive. It is much easier to find and eat something that cannot see you, particularly if it is lit up like a tasty red holiday snack.

Reference: https://latzlab.ucsd.edu/bioluminescence/

Saturday, November 27, 2021

BIOLUMINESCENCE: CHEMICAL POETRY

Light in the oceans? It is chemistry, my friends. 

In the inky blackness of the deep sea, more than 90% of the animals are luminescent. It is quite a startling number but makes good sense when you think of the edge bioluminescence provides. 

The ability to generate light helps umpteen animals find mates, attracts prey and avoid predation. Handy stuff, light. 

What you know about light above the surface does not hold true for the light you see as bioluminescence. Its energy and luminosity come from a chemical reaction. 

In a luminescent reaction, two types of chemicals — luciferin and luciferase — combine together. Together, they produce cold light — light that generates less than 20% thermal radiation or heat. 

The light you see is produced by a compound called Luciferin. It is the shiny, showy bit in this chemical show. Luciferase acts as an enzyme, the substance that acts as a catalyst controlling the rate of chemical reactions, allowing the luciferin to release energy as it is oxidized. The colour of the light depends on the chemical structures of the chemicals. There are more than a dozen known chemical luminescent systems, meaning that bioluminescence evolved independently in different groups of organisms.

Coelenterazine is the type of luciferin we find in shrimp, fish and jellyfish. Dinoflagellates and krill share another class of unique luciferins, while ostracods or firefleas and some fish have a completely different luciferin. 

The luciferase found in dinoflagellates is related to the green chemical chlorophyll found in plants. Bioluminescent dinoflagellates are a type of plankton — teensy marine organisms that make the seaways shimmer like the Milky Way as you swim through them. 

Their twinkling lights are brief, each containing about 100 million photons that shine for a tenth of a second. While each individual flicker is here and gone in the wink of an eye, en masse they are awe-inspiring. I have spent many wondrous evenings scuba diving amongst these glittering denizens off our shores. 

Cotylorhiza Tuberculata Jellyfish
In this close up of a Cotylorhiza Tuberculata Jellyfish, you can see the luminosity of her blue and white tentacles. The occurrence of identical luciferins for different types of organisms may suggest a dietary source for some groups strengthening the adage, you are what you eat, or perhaps you glow how you eat

Bacteria and fireflies have unique luminescent chemistries. Fireflies light up when oxygen combines with calcium, adenosine triphosphate (ATP) and luciferin in the presence of luciferase. 

For bacteria, the world stage of luminosity is quite small — and a bit gormless. Just how much light they emit and when is a free-for-all. Not so for the rest of our bioluminescent friends who have very precise control over when they shine and just how bright. 

Bioluminescence comes in a variety of colours, from blue through red. The colour is based on the chemistry, which involves a substrate molecule called luciferin, the source of energy that goes into light, and an enzyme called luciferase or photoprotein. 

Most of this lighting up of our world happens on land or in saltwater. There are almost no bioluminescent organisms native to freshwater.

In terrestrial plants and animals — fireflies, beetles and fungi like this Ghost Fungus, Omphalotus nidiformis, a gilled basidiomycete mushroom — we commonly find green, yellow, and sometimes red. 

In the ocean, bioluminescence is mostly blue-green or green. You would think that blues and green would not show up all that well in our seas but, surprisingly, they do. While sound travels better through saltwater than air, it is the reverse for light. 

Various colours of light do not transmit equally through saltwater. Once we move deeper than the top layer of the ocean warmed by the sun and brimming with nutrients, the epipelagic zone, and move deeper through the mesopelagic, deeper and deeper still to the bathypelagic, frigid abyssalpelagic and finally the deep trenches of the icy pressure and all but inhospitable hadalpelagic, less and less light — until no light — gets through.

It is the twilight of the mesopelagic, 200 - 1000 metres below the surface, that is the sweet spot for most of our bioluminescent friends. Here, only very faint sunlight gets through. The water pressure is higher than at the surface but still lacks the crushing intensity of the lower zones. It is here that bioluminescence becomes a real advantage — good real estate and the showmanship of light pays gold.

We know that the deeper you go in our oceans, less and less sunlight gets through, so if the purpose of bioluminescence is to provide a signal that is noticed by prey, potential mates and predators alike, it is important that the light moves through the seawater, and not be absorbed or scattered — and this plays out in the colours evolved to be seen here. 

If you have spent any time underwater, you will know that blue-green light transmits best through seawater. The deeper you go, the colours fade. Gone are the reds and yellows until everything looks brown or blue-green. Because of this, it is no surprise that blue-green is the most common colouring of bioluminescence in our oceans. 

There are some exceptions to the blue-green/green colour rule — minuscule planktonic polychaete worms, Tomopteris helgolandica, emit yellow light, and deep-sea fish Malacosteus niger in the family Stomiidae, the barbeled dragonfishes, produce both red and blue. 

Malacosteus niger's unique adaptation of producing red bioluminescence is only found in two other deep-sea dwelling creatures, Aristostomias and Pachystomias

This rare form of bioluminescence can reach up to 700 nm in the deep-sea and cannot be perceived by green and blue bioluminescent organisms — granting M. niger a considerable advantage while hunting at depth.

The red light may function as an invisible searchlight of sorts because most animals in the ocean cannot see red light, while the eyes of M. niger are red-sensitive. It is much easier to find and eat something that cannot see you, particularly if it is lit up like a tasty red holiday snack.

Reference: https://latzlab.ucsd.edu/bioluminescence/